SHEHU, AMARDA: search on Z-Library

The world's largest scientific articles store. 70,000,000+ articles for free.

Don't use scam websites

1

Guest Editorial on the Special Issue on Informatics on Biomedical Data Learning, Reasoning, and Representation

Kahveci, Tamer, Pozzi, Giuseppe, Shehu, Amarda, Wang, May Dongmei

Journal:

IEEE Journal of Biomedical and Health Informatics

Year:

2019

Language:

english

File:

PDF, 191 KB

english, 2019

2

Basin Hopping as a General and Versatile Optimization Framework for the Characterization of Biological Macromolecules

Olson, Brian, Hashmi, Irina, Molloy, Kevin, Shehu, Amarda

Journal:

Advances in Artificial Intelligence

Year:

2012

Language:

english

File:

PDF, 4.13 MB

english, 2012

3

Effective Automated Feature Construction and Selection for Classification of Biological Sequences

Kamath, Uday, De Jong, Kenneth, Shehu, Amarda, de Brevern, Alexandre G.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.01 MB

english, 2014

4

Improving Recognition of Antimicrobial Peptides and Target Selectivity through Machine Learning and Genetic Programming

Veltri, Daniel, Kamath, Uday, Shehu, Amarda

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.35 MB

english, 2015

5

[ACM Press the 2016 - Denver, Colorado, USA (2016.07.20-2016.07.24)] Proceedings of the 2016 on Genetic and Evolutionary Computation Conference Companion - GECCO '16 Companion - Women@GECCO 2016 Chairs' Welcome

Doerr, Carola, Handl, Julia, Hart, Emma, Ochoa, Gabriela, Shehu, Amarda, Tušar, Tea, Vostinar, Anya E., Zarges, Christine, Zincir-Heywood, Nur

Year:

2016

Language:

english

File:

PDF, 762 KB

english, 2016

6

[ACM Press the 8th ACM International Conference - Boston, Massachusetts, USA (2017.08.20-2017.08.23)] Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17 - Evolving Conformation Paths to Model Protein Structural Transitions

Sapin, Emmanuel, De Jong, Kenneth, Shehu, Amarda

Year:

2017

Language:

english

File:

PDF, 3.00 MB

english, 2017

7

Multiscale Estimation of Binding Kinetics Using Brownian Dynamics, Molecular Dynamics and Milestoning

Votapka, Lane W., Amaro, Rommie E., Shehu, Amarda

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 2.13 MB

english, 2015

8

From Extraction of Local Structures of Protein Energy Landscapes to Improved Decoy Selection in Template-Free Protein Structure Prediction

Akhter, Nasrin, Shehu, Amarda

Journal:

Year:

2018

Language:

english

File:

PDF, 3.13 MB

english, 2018

9

[IEEE 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - San Diego, CA, USA (2019.11.18-2019.11.21)] 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Identifying Near-Native Protein Structures via Anomaly Detection

Tadepalli, Sivani, Akhter, Nasrin, Barbara, Daniel, Shehu, Amarda

Year:

2019

File:

PDF, 9.76 MB

2019

10

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - Jumping low, jumping high: Controlling hopping in the protein energy surface

Olson, Brian, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 285 KB

english, 2012

11

[ACM Press the 2016 - Denver, Colorado, USA (2016.07.20-2016.07.24)] Proceedings of the 2016 on Genetic and Evolutionary Computation Conference Companion - GECCO '16 Companion - Path-based Guidance of an Evolutionary Algorithm in Mapping a Fitness Landscape and its Connectivity

Sapin, Emmanuel, De Jong, Kenneth, Shehu, Amarda

Year:

2016

Language:

english

File:

PDF, 9.14 MB

english, 2016

12

Computing energy landscape maps and structural excursions of proteins

Emmanuel Sapin,Daniel B. Carr,Kenneth A. De Jong,Amarda Shehu

Journal:

Year:

2016

Language:

english

File:

PDF, 4.50 MB

english, 2016

13

Multiscale characterization of protein conformational ensembles

Amarda Shehu, Lydia E. Kavraki, Cecilia Clementi

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 898 KB

english, 2009

14

Computer scientist in profile

Journal:

ACM SIGBioinformatics Record

Year:

2014

File:

PDF, 157 KB

2014

15

[IEEE 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Belfast, United Kingdom (2014.11.2-2014.11.5)] 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - A novel method to improve recognition of antimicrobial peptides through distal sequence-based features

Veltri, Daniel, Kamath, Uday, Shehu, Amarda

Year:

2014

Language:

english

File:

PDF, 859 KB

english, 2014

16

[IEEE 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Washington, DC, USA (2015.11.9-2015.11.12)] 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Computing transition paths in multiple-basin proteins with a probabilistic roadmap algorithm guided by structure data

Maximova, Tatiana, Plaku, Erion, Shehu, Amarda

Year:

2015

Language:

english

File:

PDF, 1003 KB

english, 2015

17

Balancing multiple objectives in conformation sampling to control decoy diversity in template-free protein structure prediction

Zaman, Ahmed Bin, Shehu, Amarda

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 2.42 MB

english, 2019

18

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - A population-based evolutionary algorithm for sampling minima in the protein energy surface

Saleh, Sameh, Olson, Brian, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 2.36 MB

english, 2012

19

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - Exploring the Structure Space of Wildtype Ras Guided by Experimental Data

Clausen, Rudy, Shehu, Amarda

Year:

2007

Language:

english

File:

PDF, 1.35 MB

english, 2007

20

Guest Editorial for Special Section on BIBM 2014

Yoo, Illhoi, Shehu, Amarda

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2017

Language:

english

File:

PDF, 80 KB

english, 2017

21

[ACM Press the 10th ACM International Conference - Niagara Falls, NY, USA (2019.09.07-2019.09.10)] Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics - BCB '19 - Learning Reduced Latent Representations of Protein Structure Data

Alam, Fardina Fathmiul, Rahman, Taseef, Shehu, Amarda

Year:

2019

File:

PDF, 1.64 MB

2019

22

Sampling Conformation Space to Model Equilibrium Fluctuations in Proteins

Amarda Shehu, Cecilia Clementi, Lydia E. Kavraki

Journal:

Year:

2007

Language:

english

File:

PDF, 1.76 MB

english, 2007

23

[IEEE 2011 IEEE Congress on Evolutionary Computation (CEC) - New Orleans, LA, USA (2011.06.5-2011.06.8)] 2011 IEEE Congress of Evolutionary Computation (CEC) - An evolutionary-based approach for feature generation: Eukaryotic promoter recognition

Kamath, Uday, De Jong, Kenneth A., Shehu, Amarda

Year:

2011

Language:

english

File:

PDF, 1.20 MB

english, 2011

24

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - Protein-protein Docking Using Information from Native Interaction Interfaces

Hashmi, Irina, Shehu, Amarda

Year:

2007

Language:

english

File:

PDF, 278 KB

english, 2007

25

GUIDING PROBABILISTIC SEARCH OF THE PROTEIN CONFORMATIONAL SPACE WITH STRUCTURAL PROFILES

OLSON, BRIAN, MOLLOY, KEVIN, HENDI, S. FARID, SHEHU, AMARDA

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2012

Language:

english

File:

PDF, 346 KB

english, 2012

26

[ACM Press the 10th ACM International Conference - Niagara Falls, NY, USA (2019.09.07-2019.09.10)] Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics - BCB '19 - Decoy Ensemble Reduction in Template-free Protein Structure Prediction

Zaman, Ahmed Bin, Kamranfar, Parastoo, Domeniconi, Carlotta, Shehu, Amarda

Year:

2019

Language:

english

File:

PDF, 4.17 MB

english, 2019

27

Are nicotinic acetylcholine receptors coupled to G proteins?

Kabbani, Nadine, Nordman, Jacob C., Corgiat, Brian A., Veltri, Daniel P., Shehu, Amarda, Seymour, Victoria A., Adams, David J.

Journal:

Year:

2013

Language:

english

File:

PDF, 888 KB

english, 2013

28

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - A robotics-inspired method to sample conformational paths connecting known functionally-relevant structures in protein systems

Molloy, Kevin, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 1.58 MB

english, 2012

29

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - Mapping conformational pathways between known functional protein states

Molloy, Kevin, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 137 KB

english, 2012

30

[IEEE 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Belfast, United Kingdom (2014.11.2-2014.11.5)] 2014 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Sampling-based methods for a full characterization of energy landscapes of small peptides

Devaurs, Didier, Shehu, Amarda, Simeon, Thierry, Cortes, Juan

Year:

2014

Language:

english

File:

PDF, 2.14 MB

english, 2014

31

pMD-Membrane: A Method for Ligand Binding Site Identification in Membrane-Bound Proteins

Prakash, Priyanka, Sayyed-Ahmad, Abdallah, Gorfe, Alemayehu A., Shehu, Amarda

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 6.04 MB

english, 2015

32

Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations

Kukic, Predrag, Kannan, Arvind, Dijkstra, Maurits J. J., Abeln, Sanne, Camilloni, Carlo, Vendruscolo, Michele, Shehu, Amarda

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 5.92 MB

english, 2015

33

[ACM Press the 8th ACM International Conference - Boston, Massachusetts, USA (2017.08.20-2017.08.23)] Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17 - Highlights Talks at ACM BCB 2017

Shehu, Amarda, Kahveci, Tamer, Pozzi, Giuseppe

Year:

2017

Language:

english

File:

PDF, 783 KB

english, 2017

34

[ACM Press the 10th ACM International Conference - Niagara Falls, NY, USA (2019.09.07-2019.09.10)] Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics - BCB '19 - Decoy Ensemble Reduction in Template-free Protein Structure Prediction

Zaman, Ahmed Bin, Kamranfar, Parastoo, Domeniconi, Carlotta, Shehu, Amarda

Year:

2019

File:

PDF, 4.17 MB

2019

35

Reducing Ensembles of Protein Tertiary Structures Generated De Novo via Clustering

Zaman, Ahmed Bin, Kamranfar, Parastoo, Domeniconi, Carlotta, Shehu, Amarda

Journal:

Year:

2020

File:

PDF, 4.03 MB

2020

36

[IEEE 2010 IEEE Congress on Evolutionary Computation (CEC) - Barcelona, Spain (2010.07.18-2010.07.23)] IEEE Congress on Evolutionary Computation - Using evolutionary computation to improve SVM classification

Kamath, Uday, Shehu, Amarda, De Jong, Kenneth

Year:

2010

Language:

english

File:

PDF, 774 KB

english, 2010

37

Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit

Keedy, Daniel A., Fraser, James S., van den Bedem, Henry, Shehu, Amarda

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 4.23 MB

english, 2015

38

Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary Algorithm

Clausen, Rudy, Ma, Buyong, Nussinov, Ruth, Shehu, Amarda, Elofsson, Arne

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 6.18 MB

english, 2015

39

From Molecular Energy Landscapes to Equilibrium Dynamics Via Landscape Analysis and Markov State Models

Kabir, Kazi Lutful, Akhter, Nasrin, Shehu, Amarda

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2019

Language:

english

File:

PDF, 865 KB

english, 2019

40

Modeling protein conformational ensembles: From missing loops to equilibrium fluctuations

Amarda Shehu, Cecilia Clementi, Lydia E. Kavraki

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 749 KB

english, 2006

41

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Systematic analysis of global features and model building for recognition of antimicrobial peptides

Randou, Elena G., Veltri, Daniel, Shehu, Amarda

Year:

2013

Language:

english

File:

PDF, 1.19 MB

english, 2013

42

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - A tree-based search to bias sampling of protein decoy conformations

Molloy, Kevin, Shehu, Amarda

Year:

2012

Language:

english

File:

PDF, 132 KB

english, 2012

43

[ACM Press the 5th ACM Conference - Newport Beach, California (2014.09.20-2014.09.23)] Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '14 - A multiscale hybrid evolutionary algorithm to obtain sample-based representations of multi-basin protein energy landscapes

Clausen, Rudy, Shehu, Amarda

Year:

2014

Language:

english

File:

PDF, 5.41 MB

english, 2014

44

[ACM Press the Companion Publication of the 2015 - Madrid, Spain (2015.07.11-2015.07.15)] Proceedings of the Companion Publication of the 2015 on Genetic and Evolutionary Computation Conference - GECCO Companion '15 - Mapping Multiple Minima in Protein Energy Landscapes with Evolutionary Algorithms

Sapin, Emmanuel, De Jong, Kenneth, Shehu, Amarda

Year:

2015

Language:

english

File:

PDF, 989 KB

english, 2015

45

Computational biologist in profile

Journal:

ACM SIGBioinformatics Record

Year:

2013

Language:

english

File:

PDF, 94 KB

english, 2013

46

A stochastic roadmap method to model protein structural transitions

Molloy, Kevin, Clausen, Rudy, Shehu, Amarda

Journal:

Year:

2016

Language:

english

File:

PDF, 1.29 MB

english, 2016

47

[ACM Press the 2015 - Madrid, Spain (2015.07.11-2015.07.15)] Proceedings of the 2015 on Genetic and Evolutionary Computation Conference - GECCO '15 - Evolution Strategies for Exploring Protein Energy Landscapes

Clausen, Rudy, Sapin, Emmanuel, De Jong, Kenneth A., Shehu, Amarda

Year:

2015

Language:

english

File:

PDF, 2.75 MB

english, 2015

48

[ACM Press the 5th ACM Conference - Newport Beach, California (2014.09.20-2014.09.23)] Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '14 - Knowledge-based search and multi-objective filters

Hashmi, Irina, Veltri, Daniel, Kabbani, Nadine, Shehu, Amarda

Year:

2014

Language:

english

File:

PDF, 1.15 MB

english, 2014

49

idDock+: Integrating Machine Learning in Probabilistic Search for Protein–Protein Docking

Hashmi, Irina, Shehu, Amarda

Journal:

Journal of Computational Biology

Year:

2015

Language:

english

File:

PDF, 935 KB

english, 2015

50

Evaluating Autoencoder-Based Featurization and Supervised Learning for Protein Decoy Selection

Alam, Fardina Fathmiul, Rahman, Taseef, Shehu, Amarda

Journal:

Year:

2020

File:

PDF, 13.12 MB

2020

To build up a library is to create a life. It’s never just a random collection of books.

— Carlos María Domínguez

Official channel

Z-Library Desktop Launcher

Z-Library Since 2009 support@z-lib.do

EnglishРусскийEspañolItalianoελληνικάاللغة العربيةBahasa IndonesiaBahasa Malaysiaहिन्दीDeutschFrançaisPortuguêsУкраїнськаPolski中文繁體中文日本語Tiếng ViệtAzərbaycan DiliՀայոց լեզուภาษาไทยTürk Diliქართველიবাংলাپښتوతెలుగుاردو한국어SrpskiБългарски